Publications

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BN++ Publications

  • BNDB - the Biochemical Network Database. 
    Jan Küntzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof. 
    BMC Bioinformatics. 02/2007; 8:367. DOI:10.1186/1471-2105-8-367

  • BN++ - a Biological Information System. 
    Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof. 
    http://journal.imbio.de/index.php?paper_id=34

Publications using BiNA

  • NetworkTrail - a web service for identifying and visualizing deregulated subnetworks. 
    Daniel Stöckel, Oliver Müller, Tim Kehl, Andreas Gerasch, Christina Backes, Alexander Rurainski, Andreas Keller, Michael Kaufmann, Hans-Peter Lenhof.
    Bioinformatics. 04/2013; DOI:10.1093/bioinformatics/btt204 

  • miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. 
    Cedric Laczny, Petra Leidinger, Jan Haas, Nicole Ludwig, Christina Backes, Andreas Gerasch, Michael Kaufmann, Britta Vogel, Hugo A Katus, Benjamin Meder, Cord Stähler, Eckart Meese, Hans-Peter Lenhof, Andreas Keller. 
    BMC Bioinformatics. 02/2012; 13:36. DOI:10.1186/1471-2105-13-36

  • An integer linear programming approach for finding deregulated subgraphs in regulatory networks. 
    Christina Backes, Alexander Rurainski, Gunnar W Klau, Oliver Müller, Daniel Stöckel, Andreas Gerasch, Jan Küntzer, Daniela Maisel, Nicole Ludwig, Matthias Hein, Andreas Keller, Helmut Burtscher, Michael Kaufmann, Eckart Meese, Hans-Peter Lenhof. 
    Nucleic Acids Research. 12/2011; 40(6):e43. DOI:10.1093/nar/gkr1227

  • FASIMU: flexible software for flux-balance computation series in large metabolic networks. 
    Andreas Hoppe, Sabrina Hoffmann, Andreas Gerasch, Christoph Gille, Hermann-Georg Holzhütter. 
    BMC Bioinformatics. 01/2011; 12:28. DOI:10.1186/1471-2105-12-28

  • A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis. 
    Andreas Keller, Christina Backes, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof. 
    Bioinformatics. 09/2009; 25(21):2787-94. DOI:10.1093/bioinformatics/btp510

  • GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. 
    Andreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof. 
    BMC Bioinformatics. 01/2009; 9:552. DOI:10.1186/1471-2105-9-552